Wing Commander Secret Missions is a simulation game that follows the story of Lieutenant Lee "Link" Armstrong, a fighter pilot who is sent on secret missions to fight against the Kilrathi Empire.
The game takes place during a fictional war between humans and the Kilrathi, an alien species. Link must complete his missions while dealing with the consequences of his actions and uncovering a sinister plot that threatens humanity's very existence.
Gameplay involves controlling Link as he navigates through space, completing objectives and engaging in dogfights against enemy pilots. The game features a variety of aircraft, each with its own unique characteristics and abilities.
The gameplay is divided into several missions, each with its own objectives and challenges. Players must use strategy and skill to complete these missions, taking into account factors such as fuel levels, pilot health, and enemy positions.