J.League Greatest Eleven takes place during the football season in Japan, where players compete against each other or the computer in a variety of game modes. In J.League mode, one or two players can play against the computer, while Exhibition mode allows up to four human players to compete. Players can choose from ten local Japanese teams and select formations before matches begin. The player with the highest points for goals throughout the tournament earns top ranks and the J.League Cup.
The gameplay in J.League Greatest Eleven involves controlling your team's movements, passing, shooting, and defending. Players can switch between different positions during a match to create attacking or defensive opportunities. The game also features various stadiums and weather conditions that affect gameplay.